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Bio-Grid-Run-SGE-0.0386
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  • 06 May 2014 08:13:37 UTC
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  • License: perl_5
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Documentation

jclone
clone job directory
Bio::Grid::Run::SGE::ClusterScript
Write cluster scripts for Bio::Grid::Run::SGE
Bio::Grid::Run::SGE::Log::Notify
get notified if a job finishes
cl_iprscan.pl
clusterscript to run interpro scans
cl_muscle.pl
show your muscles on the cluster.

Modules

Bio::Grid::Run::SGE
Distribute (biological) analyses on the local SGE grid
Bio::Grid::Run::SGE::Index
Provides an interface to load index classes.
Bio::Grid::Run::SGE::Index::Dummy
dummy index for testing purposes
Bio::Grid::Run::SGE::Index::FileList
Creates an index from a list of files
Bio::Grid::Run::SGE::Iterator
Provides an interface to load iterator classes.
Bio::Grid::Run::SGE::Iterator::AllvsAll
Runs all elements of one index against each other
Bio::Grid::Run::SGE::Iterator::AllvsAllNoRep
Runs all elements of one index against each other, without repetitions
Bio::Grid::Run::SGE::Iterator::AvsB
iterate over two different indices
Bio::Grid::Run::SGE::Iterator::Consecutive
iterate consecutively through an index
Bio::Grid::Run::SGE::Role::Indexable
Basic role for all indices
Bio::Grid::Run::SGE::Role::Iterable
iterator role/base class
Bio::Grid::Run::SGE::Util
Utility functions for Bio::Grid::Run::SGE
Bio::Grid::Run::SGE::Util::Blast
basic blast utitlity functions for cluster-wide operations
Bio::Grid::Run::SGE::Worker
Run the cluster script
FindBinNew
Locate directory of original perl script

Provides

Bio::Grid::Run::SGE::Config
in lib/Bio/Grid/Run/SGE/Config.pm
Bio::Grid::Run::SGE::Index::General
in lib/Bio/Grid/Run/SGE/Index/General.pm
Bio::Grid::Run::SGE::Index::List
in lib/Bio/Grid/Run/SGE/Index/List.pm
Bio::Grid::Run::SGE::Index::ListFromFile
in lib/Bio/Grid/Run/SGE/Index/ListFromFile.pm
Bio::Grid::Run::SGE::Index::Range
in lib/Bio/Grid/Run/SGE/Index/Range.pm
Bio::Grid::Run::SGE::Iterator::Dummy
in lib/Bio/Grid/Run/SGE/Iterator/Dummy.pm
Bio::Grid::Run::SGE::Iterator::List
in lib/Bio/Grid/Run/SGE/Iterator/List.pm
Bio::Grid::Run::SGE::Iterator::None
in lib/Bio/Grid/Run/SGE/Iterator/None.pm
Bio::Grid::Run::SGE::Log::Analysis
in lib/Bio/Grid/Run/SGE/Log/Analysis.pm
Bio::Grid::Run::SGE::Log::Notify::Jabber
in lib/Bio/Grid/Run/SGE/Log/Notify/Jabber.pm
Bio::Grid::Run::SGE::Log::Notify::Mail
in lib/Bio/Grid/Run/SGE/Log/Notify/Mail.pm
Bio::Grid::Run::SGE::Log::Worker
in lib/Bio/Grid/Run/SGE/Log/Worker.pm
Bio::Grid::Run::SGE::Master
in lib/Bio/Grid/Run/SGE/Master.pm
Bio::Grid::Run::SGE::Util::ExampleEnvironment
in lib/Bio/Grid/Run/SGE/Util/ExampleEnvironment.pm
Mtest
in misc/Mtest.pm

Other files