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Bio-Grid-Run-SGE-0.033
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  • 28 Nov 2013 14:40:33 UTC
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  • License: perl_5
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Documentation

jclone
clone job directory
Bio::Grid::Run::SGE::Configuration
cl_iprscan.pl
clusterscript to run interpro scans
cl_muscle.pl
show your muscles on the cluster.

Modules

Bio::Grid::Run::SGE
Distribute (biological) analyses on the local SGE grid
Bio::Grid::Run::SGE::Index
Provides an interface to load index classes.
Bio::Grid::Run::SGE::Index::Dummy
dummy index for testing purposes
Bio::Grid::Run::SGE::Index::FileList
Creates an index from a list of files
Bio::Grid::Run::SGE::Iterator
Provides an interface to load iterator classes.
Bio::Grid::Run::SGE::Iterator::AllvsAll
Iterate through two indices by combining all elements from the first with the second index.
Bio::Grid::Run::SGE::Iterator::Consecutive
iterate consecutively through an index
Bio::Grid::Run::SGE::Role::Indexable
Basic role for all indices
Bio::Grid::Run::SGE::Role::Iterable
iterator role/base class
Bio::Grid::Run::SGE::Util
Utility functions for Bio::Grid::Run::SGE
Bio::Grid::Run::SGE::Util::Blast
basic blast utitlity functions for cluster-wide operations
Bio::Grid::Run::SGE::Worker
Run the cluster script

Provides

Bio::Grid::Run::SGE::Index::General
in lib/Bio/Grid/Run/SGE/Index/General.pm
Bio::Grid::Run::SGE::Index::List
in lib/Bio/Grid/Run/SGE/Index/List.pm
Bio::Grid::Run::SGE::Index::Range
in lib/Bio/Grid/Run/SGE/Index/Range.pm
Bio::Grid::Run::SGE::Iterator::AllvsAllNoRep
in lib/Bio/Grid/Run/SGE/Iterator/AllvsAllNoRep.pm
Bio::Grid::Run::SGE::Iterator::AvsB
in lib/Bio/Grid/Run/SGE/Iterator/AvsB.pm
Bio::Grid::Run::SGE::Iterator::Dummy
in lib/Bio/Grid/Run/SGE/Iterator/Dummy.pm
Bio::Grid::Run::SGE::Iterator::List
in lib/Bio/Grid/Run/SGE/Iterator/List.pm
Bio::Grid::Run::SGE::Iterator::None
in lib/Bio/Grid/Run/SGE/Iterator/None.pm
Bio::Grid::Run::SGE::Log::Analysis
in lib/Bio/Grid/Run/SGE/Log/Analysis.pm
Bio::Grid::Run::SGE::Log::Worker
in lib/Bio/Grid/Run/SGE/Log/Worker.pm
Bio::Grid::Run::SGE::Master
in lib/Bio/Grid/Run/SGE/Master.pm
Bio::Grid::Run::SGE::Util::ExampleEnvironment
in lib/Bio/Grid/Run/SGE/Util/ExampleEnvironment.pm
Mtest
in misc/Mtest.pm

Other files