15 Apr 2011 19:35:57 UTC
- Distribution: BioPerl-DB
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- License: perl_5
- Perl: v5.6.1
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- Latest versionCJFIELDS Christopher Fieldsand 1 contributors
- BioPerl Team
- AUTHOR - Hilmar Lapp
Bio::DB::BioSQL::Oracle::TermAdaptorDriver - DESCRIPTION of Object
Give standard usage here
Describe the object here
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
firstname.lastname@example.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
Email hlapp at gmx.net
Additional contributors names and emails here
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : remove_synonyms Usage : Function: Removes all synonyms for an ontology term. Example : Returns : TRUE on success, and FALSE otherwise. Args : The calling persistence adaptor. The persistent term object for which to remove the synonyms (a Bio::DB::PersistentObjectI compliant object with defined primary key).
Title : store_synonym Usage : Function: Stores a synonym for an ontology term. Example : Returns : TRUE on success, and FALSE otherwise. Args : The calling persistence adaptor. The persistent term object for which to store the synonym (a Bio::DB::PersistentObjectI compliant object with defined primary key). The synonym to store (a scalar).
Title : get_synonyms Usage : Function: Retrieves the synonyms for an ontology term and adds them the term's synonyms. Example : Returns : TRUE on success, and FALSE otherwise. Args : The calling persistence adaptor. The persistent term object for which to retrieve the synonyms (a Bio::DB::PersistentObjectI compliant object with defined primary key).
Title : bind_param Usage : Function: Binds a parameter value to a prepared statement. We override this in order to possibly truncate term definitions longer than 4000 characters, the limit of Oracle's VARCHAR2 data type. Note that this problem does not exist with Pg's and mysql's text types. Example : Returns : the return value of the DBI::bind_param() call Args : the DBI statement handle to bind to the index of the column (1-based) the value to bind additional arguments to be passed to the sth->bind_param call
Module Install Instructions
To install Bio::BioEntry, copy and paste the appropriate command in to your terminal.
perl -MCPAN -e shell install Bio::BioEntry
For more information on module installation, please visit the detailed CPAN module installation guide.