15 Apr 2011 19:35:57 UTC
- Distribution: BioPerl-DB
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- License: perl_5
- Perl: v5.6.1
- Activity24 month
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- Latest versionCJFIELDS Christopher Fieldsand 1 contributors
- BioPerl Team
- AUTHOR - Hilmar Lapp
Bio::DB::BioSQL::Oracle::PathAdaptorDriver - DESCRIPTION of Object
Give standard usage here
Describe the object here
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
firstname.lastname@example.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
Email hlapp at gmx.net
Additional contributors names and emails here
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : compute_transitive_closure Usage : Function: Compute the transitive closure over a given ontology and populate the respective path table in the relational schema. Example : Returns : TRUE on success, and FALSE otherwise Args : The calling adaptor. The ontology to compute the transitive closure over (a persistent Bio::Ontology::OntologyI compliant object). The predicate indicating identity between a term and itself, to be used as the predicate for the paths of distance zero between a term and itself. If undef the zero distance paths will not be created. A scalar that if evaluating to TRUE means truncate the paths for the respective ontology first (optional; even though the default is FALSE this parameter should usually be given as TRUE unless you know what you are doing).
Module Install Instructions
To install Bio::BioEntry, copy and paste the appropriate command in to your terminal.
perl -MCPAN -e shell install Bio::BioEntry
For more information on module installation, please visit the detailed CPAN module installation guide.