BUGS
Build.PL
Changes
docs/HOWTO-MySQL.html
INSTALL
INSTALL.SKIP
lib/Bio/BioEntry.pm
lib/Bio/DB/BioDB.pm
lib/Bio/DB/BioSQL/AnnotationCollectionAdaptor.pm
lib/Bio/DB/BioSQL/BaseDriver.pm
lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm
lib/Bio/DB/BioSQL/BioNamespaceAdaptor.pm
lib/Bio/DB/BioSQL/BiosequenceAdaptor.pm
lib/Bio/DB/BioSQL/ClusterAdaptor.pm
lib/Bio/DB/BioSQL/CommentAdaptor.pm
lib/Bio/DB/BioSQL/DBAdaptor.pm
lib/Bio/DB/BioSQL/DBLinkAdaptor.pm
lib/Bio/DB/BioSQL/LocationAdaptor.pm
lib/Bio/DB/BioSQL/MultiDB.pm
lib/Bio/DB/BioSQL/mysql/AnnotationCollectionAdaptorDriver.pm
lib/Bio/DB/BioSQL/mysql/BasePersistenceAdaptorDriver.pm
lib/Bio/DB/BioSQL/mysql/BiosequenceAdaptorDriver.pm
lib/Bio/DB/BioSQL/mysql/PathAdaptorDriver.pm
lib/Bio/DB/BioSQL/mysql/SpeciesAdaptorDriver.pm
lib/Bio/DB/BioSQL/mysql/TermAdaptorDriver.pm
lib/Bio/DB/BioSQL/OBDA.pm
lib/Bio/DB/BioSQL/OntologyAdaptor.pm
lib/Bio/DB/BioSQL/Oracle/AnnotationCollectionAdaptorDriver.pm
lib/Bio/DB/BioSQL/Oracle/BasePersistenceAdaptorDriver.pm
lib/Bio/DB/BioSQL/Oracle/BiosequenceAdaptorDriver.pm
lib/Bio/DB/BioSQL/Oracle/PathAdaptorDriver.pm
lib/Bio/DB/BioSQL/Oracle/SpeciesAdaptorDriver.pm
lib/Bio/DB/BioSQL/Oracle/TermAdaptorDriver.pm
lib/Bio/DB/BioSQL/PathAdaptor.pm
lib/Bio/DB/BioSQL/Pg/AnnotationCollectionAdaptorDriver.pm
lib/Bio/DB/BioSQL/Pg/BasePersistenceAdaptorDriver.pm
lib/Bio/DB/BioSQL/Pg/BiosequenceAdaptorDriver.pm
lib/Bio/DB/BioSQL/Pg/PathAdaptorDriver.pm
lib/Bio/DB/BioSQL/Pg/SpeciesAdaptorDriver.pm
lib/Bio/DB/BioSQL/Pg/TermAdaptorDriver.pm
lib/Bio/DB/BioSQL/PrimarySeqAdaptor.pm
lib/Bio/DB/BioSQL/ReferenceAdaptor.pm
lib/Bio/DB/BioSQL/RelationshipAdaptor.pm
lib/Bio/DB/BioSQL/SeqAdaptor.pm
lib/Bio/DB/BioSQL/SeqFeatureAdaptor.pm
lib/Bio/DB/BioSQL/SimpleValueAdaptor.pm
lib/Bio/DB/BioSQL/SpeciesAdaptor.pm
lib/Bio/DB/BioSQL/TermAdaptor.pm
lib/Bio/DB/CacheServer/SeqDB.pm
lib/Bio/DB/DBAdaptorI.pm
lib/Bio/DB/DBContextI.pm
lib/Bio/DB/DBD.pm
lib/Bio/DB/DBI.pm
lib/Bio/DB/DBI/base.pm
lib/Bio/DB/DBI/mysql.pm
lib/Bio/DB/DBI/Oracle.pm
lib/Bio/DB/DBI/Pg.pm
lib/Bio/DB/DBI/Transaction.pm
lib/Bio/DB/DBI/TransactionListener.pm
lib/Bio/DB/EasyArgv.pm
lib/Bio/DB/PersistenceAdaptorI.pm
lib/Bio/DB/Persistent/BioNamespace.pm
lib/Bio/DB/Persistent/ObjectRelMapperI.pm
lib/Bio/DB/Persistent/PersistentObject.pm
lib/Bio/DB/Persistent/PersistentObjectFactory.pm
lib/Bio/DB/Persistent/PrimarySeq.pm
lib/Bio/DB/Persistent/Seq.pm
lib/Bio/DB/Persistent/SeqFeature.pm
lib/Bio/DB/PersistentObjectI.pm
lib/Bio/DB/Query/AbstractQuery.pm
lib/Bio/DB/Query/BioQuery.pm
lib/Bio/DB/Query/DBQueryResult.pm
lib/Bio/DB/Query/PrebuiltResult.pm
lib/Bio/DB/Query/QueryConstraint.pm
lib/Bio/DB/Query/QueryResultI.pm
lib/Bio/DB/Query/SqlGenerator.pm
lib/Bio/DB/Query/SqlQuery.pm
lib/Bio/DB/SimpleDBContext.pm
LICENSE
Makefile.PL
MANIFEST			This list of files
META.json
META.yml
model/bioperl-maps.dia
onto-term.patch
README
scripts/biosql/bioentry2flat.pl
scripts/biosql/cgi-bin/getentry.pl
scripts/biosql/clean_ontology.pl
scripts/biosql/del-assocs-sql.pl
scripts/biosql/drop_mysql_biosql_test_dbs
scripts/biosql/freshen-annot.pl
scripts/biosql/load_interpro.pl
scripts/biosql/load_ontology.pl
scripts/biosql/load_seqdatabase.pl
scripts/biosql/merge-unique-ann.pl
scripts/biosql/terms/add-term-annot.pl
scripts/biosql/terms/conf.xml
scripts/biosql/terms/importrelation.pl
scripts/biosql/terms/interpro2go.pl
scripts/biosql/update-on-new-date.pl
scripts/biosql/update-on-new-version.pl
sql/bibliography-mysql.sql
sql/markerdb-mysql.sql
sql/rawdata-mysql.sql
t/01dbadaptor.t
t/02species.t
t/03simpleseq.t
t/04swiss.t
t/05seqfeature.t
t/06comment.t
t/07dblink.t
t/08genbank.t
t/09fuzzy2.t
t/10ensembl.t
t/11locuslink.t
t/12ontology.t
t/13remove.t
t/14query.t
t/15cluster.t
t/16obda.t
t/BioSQLBase.pm
t/data/AB030700.embl
t/data/AP000868.gb
t/data/LL-sample.seq
t/data/parkin.fasta
t/data/parkin.gb
t/data/sofa.ontology
t/data/swiss.dat
t/data/test.genbank
t/data/Titin.fasta
t/data/unigene.data
t/DBHarness.conf.example
t/DBTestHarness.pm
t/lib/Sub/Uplevel.pm
t/lib/Test/Builder.pm
t/lib/Test/Builder/Module.pm
t/lib/Test/Builder/Tester.pm
t/lib/Test/Exception.pm
t/lib/Test/Harness.pm
t/lib/Test/Harness/Assert.pm
t/lib/Test/Harness/Iterator.pm
t/lib/Test/Harness/Point.pm
t/lib/Test/Harness/Results.pm
t/lib/Test/Harness/Straps.pm
t/lib/Test/Harness/TAP.pod
t/lib/Test/Harness/Util.pm
t/lib/Test/More.pm
t/lib/Test/Simple.pm
t/lib/Test/Tutorial.pod
t/lib/Test/Warn.pm