# $Id$ # # BioPerl module for Bio::DB::Query::QueryResultI # # Please direct questions and support issues to # # Cared for by Hilmar Lapp # # Copyright Hilmar Lapp # # You may distribute this module under the same terms as perl itself # # (c) Hilmar Lapp, hlapp at gmx.net, 2002. # (c) GNF, Genomics Institute of the Novartis Research Foundation, 2002. # # You may distribute this module under the same terms as perl itself. # Refer to the Perl Artistic License (see the license accompanying this # software package, or see http://www.perl.com/language/misc/Artistic.html) # for the terms under which you may use, modify, and redistribute this module. # # THIS PACKAGE IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESS OR IMPLIED # WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF # MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE. # # POD documentation - main docs before the code =head1 NAME Bio::DB::Query::QueryResultI - DESCRIPTION of Interface =head1 SYNOPSIS Give standard usage here =head1 DESCRIPTION This outlines the basic interface for a query result that returns objects, not rows. Basically, it is a stream of objects, similarly in spirit to the other Bioperl streaming interfaces like, e.g., Bio::SeqIO. There is no specific notion here of a schema or database. =head1 FEEDBACK =head2 Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists =head2 Support Please direct usage questions or support issues to the mailing list: I rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. =head2 Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: http://redmine.open-bio.org/projects/bioperl/ =head1 AUTHOR - Hilmar Lapp Email hlapp at gmx.net =head1 CONTRIBUTORS Additional contributors names and emails here =head1 APPENDIX The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ =cut # Let the code begin... package Bio::DB::Query::QueryResultI; use vars qw(@ISA); use strict; use Bio::Root::RootI; @ISA = qw( Bio::Root::RootI ); =head2 next_object Title : next_object Usage : Function: Obtain the next object from the result stream and return it. Example : Returns : A Bioperl object (implementing at least Bio::Root::RootI) Args : none =cut sub next_object{ shift->throw_not_implemented(); } =head2 each_Object Title : each_Object Usage : Function: This is primarily a convenience method and in most implementations will just loop over next_object() and return an array of all objects. Example : Returns : A reference to an array of objects. Args : Optionally, an anonymous function for filtering objects. If given, the function is passed one argument, the object to evaluate. The object will be included in the returned array if the function returns TRUE, and rejected otherwise. =cut sub each_Object{ shift->throw_not_implemented(); } =head2 finish Title : finish Usage : Function: Indicate being finished with this result so that possibly used system resources can be released. Example : Returns : none Args : none =cut sub finish{ shift->throw_not_implemented(); } 1;