15 Apr 2011 19:35:57 UTC
- Distribution: BioPerl-DB
- Source (raw)
- Browse (raw)
- How to Contribute
- Testers (1 / 74 / 0)
- KwaliteeBus factor: 3
- % Coverage
- License: perl_5
- Perl: v5.6.1
- Activity24 month
- Download (481.25KB)
- MetaCPAN Explorer
- Subscribe to distribution
- This version
- Latest versionCJFIELDS Christopher Fieldsand 1 contributors
- BioPerl Team
- AUTHOR - Hilmar Lapp
Bio::DB::DBI::mysql - DESCRIPTION of Object
Give standard usage here
Describe the object here
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
firstname.lastname@example.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
Email hlapp at gmx.net
Describe contact details here
Additional contributors names and emails here
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : my $obj = Bio::DB::DBI::mysql->new(); Function: Builds a new Bio::DB::DBI::mysql object using the passed named parameters. Returns : an instance of Bio::DB::DBI::mysql Args : named parameters with tags -dbcontext (a Bio::DB::DBContextI implementing object) and -sequence_name (the name of the sequence for PK generation)
Title : next_id_value Usage : $pk = $obj->next_id_value("bioentry"); Function: This implementation uses standard MySQL only and hence cannot implement this method. It will throw an exception if called. Example : Returns : a value suitable for use as a primary key Args : The database connection handle to use for retrieving the next primary key value. Optionally, the name of the table. The driver is not required to honor the argument if present.
Title : last_id_value Usage : Function: Returns the last unique primary key value allocated. Depending on the argument and the driver, the value may be specific to a table, or independent of the table. This implementation will ignore the table. Example : Returns : a value suitable for use as a primary key Args : The database connection handle to use for retrieving the primary key from the last insert.
Title : nvl_sqlfunc Usage : Function: Get the name of the SQL function that takes two arguments and returns the first if it is not null, and the second otherwise. Most RDBMSs will have such a function, but unfortunately the naming is different between them. E.g., in MySQL the name is IFNULL(), whereas in Oracle it is NVL(). Example : Returns : the name of the function as a string, without parentheses Args : none
Module Install Instructions
To install Bio::BioEntry, copy and paste the appropriate command in to your terminal.
perl -MCPAN -e shell install Bio::BioEntry
For more information on module installation, please visit the detailed CPAN module installation guide.