NAME - Simple k-mer count analysis of fasta or fastq files

SYNOPSIS [-f FILE] [-d STRING] [-o STRING] [-k INTEGER] [-t STRING] [options]


This program counts k-mers of user defined length in fasta or fastq files.



File for processing


Working directory


Output directory


Kmer length to search


File type, can either be fasta or fastq

--help -h

Print short help


Prints the manual page and exits


Joerg Fallmann <>