USAGE

    inst-qual-filter.pl <infiles> --out=<suffix> [optional arguments]

REQUIRED ARGUMENTS

<infiles>

Path to input FASTA files [repeatable argument].

--out[-suffix]=<suffix>

Suffix to append to infile basenames for deriving outfile names.

OPTIONAL ARGUMENTS

--filter-out=<file>

Path to FASTA outfile collecting unpure sequences that have been filtered out [default: none].

--min[-purity]=<n>

Fraction (between 0 and 1) of pure DNA character states (ACGT) required by a sequence for it to be retained [default: 1]. All other states (including ambiguous, missing and gap-like character states) are considered as non-pure.

--version
--usage
--help
--man

Print the usual program information