NAME - Prune tips from TREE files based on id lists


version 0.211470

USAGE <infiles> [optional arguments]



Path to input IDL files [repeatable argument].



Substring(s) to strip from infile basenames before attempting to derive other infile (e.g., TREE files) and outfile names [default: none].


Suffix to append to (possibly stripped) infile basenames for deriving outfile names [default: none]. When not specified, outfile names are taken from infiles but original infiles are preserved by being appended a .bak suffix.


Path to an optional TREE file (e.g., a supermatrix tree) that will be the target of the pruning operations [default: none]. Otherwise, each IDL file is assumed to match a similarly named TREE (.tre) file.


Consider the input file as generated by ed/treeplot [default: no]. Currently, this switches to the legacy .lis format (instead of the modern .idl format).


Interpret the list as a negative list instead of a positive list [default: no]. This means that seqs corresponding to listed ids are discarded.


Print the usual program information


Denis BAURAIN <>


This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.