idealize-ali.pl - Discard (nearly) gap-only sites from ALI files
idealize-ali.pl <infiles> [optional arguments]
Number of non-gap character states allowed in a site to be dropped [default: 0]. When specified as a fraction between 0 and 1, it is interpreted as relative to the number of sequences in the ALI. By default, only shared gaps are dropped.
Suffix to append to infile basenames for deriving outfile names [default: none]. When not specified, outfile names are taken from infiles but original infiles are preserved by being appended a .bak suffix.
Print the usual program information
Denis BAURAIN <firstname.lastname@example.org>
This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.