NAME

extract-ali.pl - Extract sequences from a FASTA database file based on id lists

VERSION

version 0.211470

USAGE

    extract-ali.pl <infiles> --database=<file> [optional arguments]

REQUIRED ARGUMENTS

<infiles>

Path to input IDL files [repeatable argument].

--database=<file>

Path to the FASTA file containing the sequence database.

OPTIONAL ARGUMENTS

--truncate-ids

Truncate database ids on first whitespace before extraction [default: no].

--reorder

Reorder sequences following list [default: no].

--version
--usage
--help
--man

Print the usual program information

AUTHOR

Denis BAURAIN <denis.baurain@uliege.be>

COPYRIGHT AND LICENSE

This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.