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21 Mar 2014 10:32:41 UTC
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Rutger Vos
- Dependencies
- Bio::Phylo
- BioPerl
- Proc::ProcessTable
- YAML
- mod_perl
- and possibly others
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Modules
BioVeL web services for phyloinformaticsbase class for asynchronous web servicesexample asynchronous servicewrapper for the SUPERSMART TNRS servicebase class for synchronous web servicesextracts and converts data from a NeXML documentmerges phylogenetic data and metadata into NeXMLbase class for file readersProvides
in lib/Bio/BioVeL/Service/NeXMLMerger/CharSetReader.pmin lib/Bio/BioVeL/Service/NeXMLMerger/CharSetReader/nexus.pmin lib/Bio/BioVeL/Service/NeXMLMerger/CharSetReader/text.pmin lib/Bio/BioVeL/Service/NeXMLMerger/DataReader.pmin lib/Bio/BioVeL/Service/NeXMLMerger/DataReader/fasta.pmin lib/Bio/BioVeL/Service/NeXMLMerger/DataReader/nexus.pmin lib/Bio/BioVeL/Service/NeXMLMerger/DataReader/phylip.pmin lib/Bio/BioVeL/Service/NeXMLMerger/MetaReader.pmin lib/Bio/BioVeL/Service/NeXMLMerger/MetaReader/json.pmin lib/Bio/BioVeL/Service/NeXMLMerger/MetaReader/tsv.pmin lib/Bio/BioVeL/Service/NeXMLMerger/TreeReader.pmin lib/Bio/BioVeL/Service/NeXMLMerger/TreeReader/newick.pmin lib/Bio/BioVeL/Service/NeXMLMerger/TreeReader/nexml.pmin lib/Bio/BioVeL/Service/NeXMLMerger/TreeReader/nexus.pmin lib/Bio/BioVeL/Service/NeXMLMerger/TreeReader/phyloxml.pmExamples
- Examples/DomainReport.txt
- Examples/ExampleTree.nex.con
- Examples/NeXMLMerger.t2flow
- Examples/Nexus_MultiplePartitions.nex
- Examples/Nexus_SimplePartition.nex
- Examples/TaxaDataExample.nex
- Examples/TaxaMetadataExample.json
- Examples/TaxaMetadataExample.tsv
- Examples/TaxaTreeExample.dnd
- Examples/TreeMetadata.tsv
- Examples/TreesExample.xml
- Examples/treebase-record.xml
Module Install Instructions
To install Bio::BioVeL, copy and paste the appropriate command in to your terminal.
cpanm Bio::BioVeL
perl -MCPAN -e shell install Bio::BioVeL
For more information on module installation, please visit the detailed CPAN module installation guide.