Documentation

This script draws NRPS/PKS BGC clusters maps in PNG
Reports all detected domain signatures for a NRPS/PKS gene cluster
Exports SQL tables of BGC data (Palantir and antiSMASH annotations)
Extracts protein sequences for different BGC scales into a FASTA file
Generates a denormalized table for BGC data
Generates PDF/Word reports from antiSMASH results

Modules

core classes and utilities for Bio::Palantir
front-end class for Bio::Palantir::Explorer module, wich handles the NRPS/PKS domain exploration without pre-existing consensus architecture
Explorer internal class for handling ClusterFasta objects
Explorer internal class for handling GeneFasta objects
front-end class for Bio::Palantir::Parser module, wich handles the parsing of biosynML.xml and regions.js antiSMASH reports
BiosynML DTD-derived internal class
BiosynML DTD-derived internal class
BiosynML DTD-derived internal class
BiosynML DTD-derived internal class
BiosynML DTD-derived internal class
BiosynML DTD-derived internal class
BiosynML DTD-derived internal class
front-end class for Bio::Palantir::Refiner module, wich handles the refinement of NRPS/PKS BGC annotations
Refiner internal class for handling ClusterPlus objects
Refiner internal class for handling DomainPlus objects
Refiner internal class for handling GenePlus objects
Clusterable Moose role for Cluster and ClusterPlus objects
Domainable Moose role for Domain and DomainPlus objects
Fillable Moose role for the construction of DomainPlus object arrays and Exploratory methods
Geneable Moose role for Gene and GenePlus objects
Modulable Moose role for Module object construction