NAME

db_types.pl

A program to print out the available feature types in a database.

SYNOPSIS

db_types.pl <database>

  Options:
  --db <database>
  --version
  --help
  

OPTIONS

The command line flags and descriptions:

--db <database>

Specify the name of a Bio::DB::SeqFeature::Store annotation database from which gene or feature annotation may be derived. If not specified, then a list of known databases in the BioToolBox configuration file .biotoolbox.cfg will be presented as a list to the user.

--version

Print the version number.

--help

Display this POD documentation.

DESCRIPTION

This program will print a list of all of the known feature types present in a Bio::DB::SeqFeature::Store database. The types are organized into groups by their source tag.

BigWigSet databases, comprised of a directory of BigWig files and a metadata file, are also supported.

AUTHOR

 Timothy J. Parnell, PhD
 Howard Hughes Medical Institute
 Dept of Oncological Sciences
 Huntsman Cancer Institute
 University of Utah
 Salt Lake City, UT, 84112

This package is free software; you can redistribute it and/or modify it under the terms of the Artistic License 2.0.