Christopher Fields
and 1 contributors


Bio::Network::IO::psi::intact - module to handle variations in PSI MI format from the IntAct database


Do not use this module directly, use Bio::Network::IO. For example:

  my $io = Bio::Network::IO->new(-format => 'psi',
                                 -source => 'intact',
                                 -file   => 'data.xml');

  my $network = $io->next_network;


There are slight differences between PSI MI files offered by various public databases. The Bio::Network::IO::psi* modules have methods for handling these variations. To load a module like this use the optional "-source" argument when creating a new Bio::Network::IO object.


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User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.                  - General discussion  - About the mailing lists


Please direct usage questions or support issues to the mailing list:

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:


Brian Osborne bosborne at