Bio::Coordinate - Modules for working with biological coordinates
# create Bio::Coordinate::Pairs or other Bio::Coordinate::MapperIs somehow $pair1; $pair2; # add them into a Collection $collection = Bio::Coordinate::Collection->new; $collection->add_mapper($pair1); $collection->add_mapper($pair2); # create a position and map it $pos = Bio::Location::Simple->new (-start => 5, -end => 9 ); $res = $collection->map($pos); $res->match->start == 1; $res->match->end == 5; # if mapping is many to one (*>1) or many-to-many (*>*) # you have to give seq_id not get unrelevant entries $pos = Bio::Location::Simple->new (-start => 5, -end => 9 -seq_id=>'clone1');
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This software is copyright (c) by Heikki Lehvaslaiho.
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